MolNFT v1 · #150637 · protein
Structure of chlamydia trachomatis effector protein CHLADUB1 bound to ubiquitin
6GZS: “Structure of chlamydia trachomatis effector protein CHLADUB1 bound to ubiquitin”. X-ray diffraction, 2 ligands (AYE, SO4). MolNFT v1 #150637 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6GZS
- Type
- protein
- Length
- 325 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B0B9A0, P0CG47
- Ligands
- AYE, SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 250 | — | B0B9A0 |
| B | — | protein | 75 | — | P0CG47 |
Ligands and binding sites
- AYE · prop-2-en-1-amine · ligand · chains A, B
- SO4 · Sulfate ion · ion · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6GZS · Structure of Chlamydia trachomatis effector protein ChlaDUB1 bound to ubiquitin · the same entry in another collection · chain A against A, TM-score 1.00
- B0B9A0 · AlphaFold monomer V2.0 prediction for deubiquitinase and deneddylase DUB1 (B0B9A0) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B0B9A0
- Every structure of UniProt P0CG47
- Elsewhere: RCSB PDB 6GZS · PDBe 6GZS · UniProt B0B9A0 · UniProt P0CG47
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.