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Ligand · WVN

WVN · 1,3,3-trimethyl-2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E)-3,7,12,16-tetramethyl-18-[(1R)-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene

WVN, 1,3,3-trimethyl-2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E)-3,7,12,16-tetramethyl-18-[(1R)-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene (C40 H56, 536.9 g/mol), in the MolNFT structures on GenesisL1…

Component
WVN
Formula
C40 H56
Class
ligand
Structures
5
PDB entries
5

Binding sites

WVN in 5 structures; the first of them:

  • 8WM6 · The structure of PSI-CAC(L-14)of R.salina at 2.7 angstroms resolution · WVN A845 · binds PHE85, LEU88, TYR92, CYS162, ALA165, GLY166, MET169, LEU210 and 3 more
  • 8WMJ · structure of PSI-11CAC complex at Logrithmic growth phase · WVN A847 · binds PHE85, LEU88, TYR92, CYS162, ALA165, GLY166, MET169, LEU210 and 4 more

Residues it binds most

LEU 134, PHE 120, ILE 97, VAL 74, ALA 61, GLY 76, TRP 78, SER 59, THR 36, MET 38 (residue and the binding sites it lines).

Found with

  • CLA · Chlorophyll A
  • DGD · Digalactosyl diacyl glycerol (dgdg)
  • IHT · (1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol
  • II0 · (1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol
  • KC2 · Chlorophyll c2
  • LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole
  • LMG · 1,2-distearoyl-monogalactosyl-diglyceride
  • LMU · Dodecyl-alpha-D-maltoside
  • PQN · Phylloquinone
  • SF4 · Iron/sulfur cluster
  • LMT · Dodecyl-beta-D-maltoside
  • BCT · Bicarbonate ion

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