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Ligand · KC2

KC2 · Chlorophyll c2

KC2, Chlorophyll c2 (C35 H28 Mg N4 O5, 608.9 g/mol), in the MolNFT structures on GenesisL1: bound in 16 records (15 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
KC2
Formula
C35 H28 Mg N4 O5
Class
ligand
Structures
16
PDB entries
15

Binding sites

KC2 in 16 structures; the first of them:

  • 6A2W · Crystal structure of fucoxanthin chlorophyll a/c complex from Phaeodactylum tricornutum · KC2 A403 · binds ARG31, LEU32, VAL35, HIS39, LEU152
  • 6JLU · Structure of PSII-FCP supercomplex from a centric diatom Chaetoceros gracilis at 3.02… · KC2 0310 · binds GLN57, ARG62, LEU63, VAL66, HIS70, LEU179
  • 7Y7B · Cryo-EM structure of cryptophyte photosystem I · KC2 1610 · binds ILE107, ASP184, ARG187, LEU188, CYS191, ASN195, LEU198

Residues it binds most

LEU 119, ARG 102, ILE 71, VAL 96, HIS 81, PHE 63, GLY 64, ALA 59, GLN 55, PRO 51 (residue and the binding sites it lines).

Found with

  • CLA · Chlorophyll A
  • DGD · Digalactosyl diacyl glycerol (dgdg)
  • LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole
  • LMG · 1,2-distearoyl-monogalactosyl-diglyceride
  • SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol
  • A86 · (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate
  • KC1 · Chlorophyll c1
  • BCT · Bicarbonate ion
  • DD6 · (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol
  • HEM · Protoporphyrin IX containing Fe
  • IHT · (1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol
  • II0 · (1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol

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