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Ligand · U42

U42 · [(2~{R},3~{S},4~{S},5~{R},6~{R})-6-[(6~{E},8~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E})-2,6,10,14,19,23-hexamethyl-25-(2,6,6-trimethylcyclohexen-1-yl)pentacosa-6,8,10,12,14,16,18,20,22,24-decaen-2-yl]oxy-3,4,5-tris(oxidanyl)oxan-2-yl]methyl pentadecanoate

U42, [(2~{R},3~{S},4~{S},5~{R},6~{R})-6-[(6~{E},8~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E})-2,6,10,14,19,23-hexamethyl-25-(2,6,6-trimethylcyclohexen-1-yl)pentacosa-6,8,10,12,14,16,18,20,22,24-decaen-2-yl]oxy-3,4,5-tris(ox…

Component
U42
Formula
C61 H96 O7
Class
ligand
Structures
1
PDB entries
1

Binding sites

U42 in 1 structure; the first of them:

  • 8IUG · Cryo-EM structure of the RC-LH core complex from roseiflexus castenholzii · U42 0103 · binds LEU37, ALA40, VAL41, HIS44, TRP48, TRP53, ILE54, ARG55 and 7 more

Residues it binds most

ILE 14, TRP 14, ALA 14, LEU 14, CYS 14, HIS 14, VAL 14, THR 12, ARG 3 (residue and the binding sites it lines).

Found with

  • BCL · Bacteriochlorophyll A
  • BPH · Bacteriopheophytin A
  • HEC · Heme C
  • LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole
  • MQE · 2-methyl-3-[(2E,6E,10E,14E,18E,22E,26E,30E,34E,38E)-3, 7,11,15,19,23,27,31,35,39,43-undecamethyltetratetraconta-2,6,10,14,18,22,26,30,34, 38,42-undecaen-1-yl]naphthalene-1,4-dione
  • PEF · Di-palmitoyl-3-sn-phosphatidylethanolamine
  • PGV · (1R)-2-{[{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11E)-octadec-11-enoate
  • U4Z · gamma-Carotene
  • UNL · Unknown ligand
  • CA · Calcium ion
  • MN · Manganese (II) ion
  • BGL · 2-O-octyl-beta-D-glucopyranose

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