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Ligand · U4Z

U4Z · gamma-Carotene

U4Z, gamma-Carotene (C40 H56, 536.9 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
U4Z
Formula
C40 H56
Class
ligand
Structures
2
PDB entries
2

Binding sites

U4Z in 2 structures; the first of them:

  • 8IUG · Cryo-EM structure of the RC-LH core complex from roseiflexus castenholzii · U4Z 1102 · binds VAL12, SER15, THR16, LEU18, GLY19, MET22, VAL25, ILE28 and 9 more
  • 8IUN · Cryo-EM structure of the CRT-LESS RC-LH core complex from roseiflexus castenholzii · U4Z 0103 · binds VAL25, ILE28, VAL29, THR32, ILE33, LEU20, ALA23, LEU24 and 12 more

Residues it binds most

VAL 21, LEU 21, ILE 21, THR 21, SER 21, PHE 21, MET 21, ALA 21, TRP 20, GLY 20 (residue and the binding sites it lines).

Found with

  • BCL · Bacteriochlorophyll A
  • BPH · Bacteriopheophytin A
  • HEC · Heme C
  • LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole
  • MQE · 2-methyl-3-[(2E,6E,10E,14E,18E,22E,26E,30E,34E,38E)-3, 7,11,15,19,23,27,31,35,39,43-undecamethyltetratetraconta-2,6,10,14,18,22,26,30,34, 38,42-undecaen-1-yl]naphthalene-1,4-dione
  • PEF · Di-palmitoyl-3-sn-phosphatidylethanolamine
  • PGV · (1R)-2-{[{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11E)-octadec-11-enoate
  • UNL · Unknown ligand
  • CA · Calcium ion
  • MN · Manganese (II) ion
  • BGL · 2-O-octyl-beta-D-glucopyranose
  • LMT · Dodecyl-beta-D-maltoside

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