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Ligand · P25

P25 · Pentyl trihydrogen diphosphate

P25, Pentyl trihydrogen diphosphate (C5 H14 O7 P2, 248.1 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
P25
Formula
C5 H14 O7 P2
Class
ligand
Structures
4
PDB entries
2

Binding sites

P25 in 4 structures; the first of them:

  • 1T9B · Crystal structure of yeast acetohydroxyacid synthase in complex with a sulfonylurea… · P25 B698 · binds VAL497, GLY498, GLN499, HIS500, MET525, GLY549, ASP550, ALA551 and 7 more
  • 1T9D · Crystal Structure Of Yeast Acetohydroxyacid Synthase In Complex With A Sulfonylurea… · P25 A1698 · binds VAL497, GLY498, GLN499, HIS500, MET525, GLY549, ASP550, ALA551 and 7 more
  • 1T9B · Crystal structure of yeast acetohydroxyacid synthase in complex with a sulfonylurea… · P25 B698 · binds VAL497, GLY498, GLN499, HIS500, MET525, GLY549, ASP550, ALA551 and 7 more
  • 1T9D · Crystal structure of yeast acetohydroxyacid synthase in complex with a sulfonylurea… · P25 A1698 · binds VAL497, GLY498, GLN499, HIS500, MET525, GLY549, ASP550, ALA551 and 7 more

Residues it binds most

GLY 6, GLN 6, MET 6, VAL 6, ALA 6, ASN 6, ASP 6, GLU 6, HIS 6, SER 6 (residue and the binding sites it lines).

Found with

  • FAD · Flavin-adenine dinucleotide
  • P22 · Ethyl dihydrogen diphosphate
  • K · Potassium ion
  • MG · Magnesium ion
  • 1CS · 1-(2-chlorophenylsulfonyl)-3-(4-methoxy-6-methyl-L,3,5-triazin-2-yl)urea
  • 1MM · Methyl 2-[({[(4-methoxy-6-methyl-1,3,5-triazin-2-yl)amino]carbonyl}amino)sulfonyl]benzoate
  • NSP · 5-(aminomethyl)-2-methylpyrimidin-4-amine
  • PYD · 2,5-dimethyl-pyrimidin-4-ylamine
  • YF3 · 2-{[(4-amino-2-methylpyrimidin-5-yl)methyl]amino}propane-1-thiol

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