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Ligand · PYD

PYD · 2,5-dimethyl-pyrimidin-4-ylamine

PYD, 2,5-dimethyl-pyrimidin-4-ylamine (C6 H9 N3, 123.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
PYD
Formula
C6 H9 N3
Class
ligand
Structures
2
PDB entries
1

Binding sites

PYD in 2 structures; the first of them:

  • 5RU7 · PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in… · PYD A201 · binds ALA21, ASP22, ILE23, VAL24, GLY48, VAL49, ALA52, PRO125 and 3 more
  • 5RU7 · Pandda analysis group deposition -- crystal structure of SARS-cov-2 NSP3 macrodomain in… · PYD A201 · binds ASP22, ILE23, GLY48, VAL49, ALA52, ALA154, PHE156

Residues it binds most

ALA 2, VAL 2, ASP 2, GLY 2, ILE 2, PHE 2, PRO 1 (residue and the binding sites it lines).

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