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Ligand · II3

II3 · (1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(1~{R},4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohex-2-en-1-yl]octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol

II3, (1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(1~{R},4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohex-2-en-1-yl]octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (C40…

Component
II3
Formula
C40 H54 O2
Class
ligand
Structures
3
PDB entries
3

Binding sites

II3 in 3 structures; the first of them:

  • 7Y7B · Cryo-EM structure of cryptophyte photosystem I · II3 1615 · binds PHE74, ASP75, PRO76, LEU77, ILE79, HIS95, VAL98, ALA99 and 10 more
  • 7Y8A · Cryo-EM structure of cryptophyte photosystem I · II3 1615 · binds PHE74, ASP75, PRO76, LEU77, ILE79, HIS95, VAL98, ALA99 and 10 more
  • 8WB4 · Structure of PSII-ACPII supercomplex from cryptophyte algae · II3 1615 · binds PHE74, ASP75, PRO76, LEU77, PHE79, HIS95, VAL98, ALA102 and 8 more

Residues it binds most

PHE 9, MET 9, VAL 9, LEU 9, PRO 9, ASP 9, HIS 8, ILE 6, ALA 5, GLN 8 (residue and the binding sites it lines).

Found with

  • 8CT · (6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene
  • CLA · Chlorophyll A
  • DGD · Digalactosyl diacyl glycerol (dgdg)
  • IHT · (1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol
  • II0 · (1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol
  • KC2 · Chlorophyll c2
  • LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole
  • LMG · 1,2-distearoyl-monogalactosyl-diglyceride
  • SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol
  • LMU · Dodecyl-alpha-D-maltoside
  • PQN · Phylloquinone
  • SF4 · Iron/sulfur cluster

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