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Ligand · GGD

GGD · Nonadec-10-enoic acid 2-[3,4-dihydroxy-6-hydroxymethyl-5-(3,4,5-trihydroxy-6-hydroxymethyl-tetrahydro-pyran-2-yloxy)-tetrahydro-pyran-2-yloxy] -1-octadec-9-enoyloxymethyl-ethyl ester

GGD, Nonadec-10-enoic acid 2-[3,4-dihydroxy-6-hydroxymethyl-5-(3,4,5-trihydroxy-6-hydroxymethyl-tetrahydro-pyran-2-yloxy)-tetrahydro-pyran-2-yloxy] -1-octadec-9-enoyloxymethyl-ethyl ester (C52 H94 O15, 959.3 g/mol), in the MolNFT…

Component
GGD
Formula
C52 H94 O15
Class
ligand
Structures
10
PDB entries
6

Binding sites

GGD in 10 structures; the first of them:

  • 1M3X · Photosynthetic Reaction Center From Rhodobacter Sphaeroides · GGD M902 · binds PRO28, PHE29, LEU204, ALA207, PHE208, ARG253, MET256, GLY257 and 12 more
  • 2J8C · X-ray high resolution structure of the photosynthetic reaction center from Rb.… · GGD M1313 · binds ILE28, GLN32, TYR40, LEU42, ASN52, GLN53, GLY54, PRO55 and 11 more
  • 4IN6 · (M)L214A mutant of the Rhodobacter sphaeroides Reaction Center · GGD H301 · binds ALA1, VAL26, GLY27, PRO28, PHE29, ARG253, MET256, GLY257 and 10 more
  • 4IN7 · (M)L214N mutant of the Rhodobacter sphaeroides Reaction Center · GGD H307 · binds ILE28, GLN32, TYR40, LEU42, ASN52, GLN53, GLY54, PRO55 and 12 more
  • 4N7K · Zinc Substituted Reaction Center of the Rhodobacter sphaeroides · GGD H305 · binds ILE28, GLN32, TYR40, LEU42, ASN52, GLY54, PRO55, PHE56 and 10 more
  • 4N7L · Zinc Substituted Reaction Center M(L214H) Variant of Rhodobacter sphaeroides · GGD H306 · binds ILE28, GLN32, TYR40, LEU42, ASN52, GLN53, GLY54, PRO55 and 12 more
  • 1M3X · Photosynthetic reaction center from rhodobacter sphaeroides · GGD M902 · binds PRO28, PHE29, LEU204, ALA207, PHE208, ARG253, MET256, GLY257 and 12 more
  • 2J8C · X-ray high resolution structure of the photosynthetic reaction center from rb.… · GGD M1313 · binds ILE28, GLN32, TYR40, LEU42, ASN52, GLN53, GLY54, PRO55 and 11 more
  • 4IN6 · (M)L214A mutant of the rhodobacter sphaeroides reaction center · GGD H301 · binds ALA1, VAL26, GLY27, PRO28, PHE29, ARG253, MET256, GLY257 and 10 more
  • 4IN7 · (M)L214N mutant of the rhodobacter sphaeroides reaction center · GGD H307 · binds ILE28, GLN32, TYR40, LEU42, ASN52, GLN53, GLY54, PRO55 and 12 more
  • 4N7K · Zinc substituted reaction center of the rhodobacter sphaeroides · GGD H305 · binds ILE28, GLN32, TYR40, LEU42, ASN52, GLY54, PRO55, PHE56 and 10 more
  • 4N7L · Zinc substituted reaction center M(L214H) variant of rhodobacter sphaeroides · GGD H306 · binds ILE28, GLN32, TYR40, LEU42, ASN52, GLN53, GLY54, PRO55 and 12 more

Residues it binds most

PHE 12, GLY 12, PRO 12, GLN 12, LEU 12, MET 12, TRP 12, ALA 12, ARG 12, TYR 12 (residue and the binding sites it lines).

Found with

  • CDL · Cardiolipin
  • PC1 · 1,2-diacyl-sn-glycero-3-phosphocholine
  • SPO · Spheroidene
  • U10 · Ubiquinone-10
  • FE · Fe (III) ion
  • HTO · Heptane-1,2,3-triol
  • PO4 · Phosphate ion
  • GOL · Glycerol
  • LDA · Lauryl dimethylamine-N-oxide
  • BCL · Bacteriochlorophyll A
  • BPH · Bacteriopheophytin A
  • 2GO · [methyl 9-acetyl-14-ethyl-20-hydroxy-4,8,13,18-tetramethyl-3-{3-oxo-3-[(3,7,11,15-tetramethylhexadec-2-en-1-yl)oxy]propyl}-3,4,20,21-tetradehydrophorbine-21-carboxylatato(2-)-kappa~4~N~23~,N~24~,N~25~,N~26~]zinc

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