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Ligand · DKB

DKB · [(2R)-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] octadecanoate

DKB, [(2R)-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] octadecanoate (C39 H78 N O8 P, 720.0 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues…

Component
DKB
Formula
C39 H78 N O8 P
Class
ligand
Structures
2
PDB entries
1

Binding sites

DKB in 2 structures; the first of them:

  • 7WLD · Cryo-EM structure of the human glycosylphosphatidylinositol transamidase complex at 2.53… · DKB U805 · binds TRP393, VAL501, ILE504, TYR505, LEU508, ASN147, PRO148, TYR149 and 12 more
  • 7WLD · Cryo-EM structure of the human glycosylphosphatidylinositol transamidase complex at 2.53… · DKB U805 · binds VAL501, ILE504, TYR505, LEU508, ASN147, PRO148, TYR149, MET339 and 8 more

Residues it binds most

TYR 2, ILE 2, ASN 2, LEU 2, PHE 2, MET 2, PRO 2, SER 2, THR 2, VAL 2 (residue and the binding sites it lines).

Found with

  • 05E · 2-azanylethyl [(2~{S},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl] hydrogen phosphate
  • 06O · [(2~{R})-1-hexadecanoyloxy-3-[[(1~{S},2~{R},3~{R}, 4~{S},5~{S},6~{R})-2-hexadecanoyloxy-3,4,5,6-tetrakis(oxidanyl)cyclohexyl]oxy-oxidanyl-phosphoryl]oxy-propan-2-yl] (9~{Z},11~{Z})-octadeca-9, 11-dienoate
  • AJP · Digitonin
  • BJR · (4S,7R)-7-[(hexadecanoyloxy)methyl]-4-hydroxy-N,N,N-trimethyl-4,9-dioxo-3,5,8-trioxa-4lambda~5~-phosphahexacosan-1-aminium
  • CDL · Cardiolipin
  • CLR · Cholesterol
  • P5S · O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy) propyl]oxy}(hydroxy)phosphoryl]-L-serine
  • PA1 · 2-amino-2-deoxy-alpha-D-glucopyranose
  • PEE · 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine
  • Y01 · Cholesterol hemisuccinate
  • CA · Calcium ion
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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