Ligand · CDR

CDR · (2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol

CDR, (2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol (C6 H12 O3, 132.2 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component: CDR
Formula: C6 H12 O3
Class: ligand
Structures: 6
PDB entries: 4

Binding sites

CDR in 6 structures; the first of them:

5XEW · Crystal structure of the [Ni2+-(chromomycin A3)2]-CCG repeats complex · CDR C1 · binds CPH106, DC23, CPH103
6L76 · Crystal structure of the Ni(II)(Chro)2-d(TTGGGCCGAA/TTCGGCCCAA) complex at 2.94 angstrom… · CDR F1 · binds DC17, CPH106, CPH103
5XEW · Crystal structure of the [NI2+-(chromomycin A3)2]-ccg repeats complex · CDR C1 · binds CPH106, DC23, CPH103
5YZE · Crystal structure of the [CO2+-(chromomycin A3)2]-D(CCG)3 complex · CDR C1 · binds CPH106, DC20, CPH103
6J0I · Structure of [CO2+-(chromomycin A3)2]-D(TTGGCGAA)2 complex · CDR H1 · binds DG6, CRH103, CRH103
6L76 · Crystal structure of the NI(II)(CHRO)2-D(TTGGGCCGAA/TTCGGCCCAA) complex at 2.94 ångström… · CDR F1 · binds DC17, CPH106, CPH103

Residues it binds most

CPH 28, DC 16, CRH 12, DG 12, DA 5 (residue and the binding sites it lines).

Found with

1GL · 2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose
ARI · (2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate
ERI · 3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose
NI · Nickel (II) ion
CO · Cobalt (II) ion

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