Ligand · 1GL

1GL · 2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose

1GL, 2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose (C7 H14 O4, 162.2 g/mol), in the MolNFT structures on GenesisL1: bound in 7 records (5 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component: 1GL
Formula: C7 H14 O4
Class: ligand
Structures: 7
PDB entries: 5

Binding sites

1GL in 7 structures; the first of them:

5XEW · Crystal structure of the [Ni2+-(chromomycin A3)2]-CCG repeats complex · 1GL D2 · binds DC6, DC7, DG8, DC9
6L76 · Crystal structure of the Ni(II)(Chro)2-d(TTGGGCCGAA/TTCGGCCCAA) complex at 2.94 angstrom… · 1GL E2 · binds DG4, DG5
5XEW · Crystal structure of the [NI2+-(chromomycin A3)2]-ccg repeats complex · 1GL D2 · binds DC6, DC7, DG8, DC9
5XJW · Crystal structure of the [CO2+-(chromomycin A3)2]-ccg repeats complex · 1GL D2 · binds DC6, DC7, DG8, DC9
5YZE · Crystal structure of the [CO2+-(chromomycin A3)2]-D(CCG)3 complex · 1GL D2 · binds DC5, DC6, DG7, DC8
6J0I · Structure of [CO2+-(chromomycin A3)2]-D(TTGGCGAA)2 complex · 1GL G2 · binds DG4, DC5
6L76 · Crystal structure of the NI(II)(CHRO)2-D(TTGGGCCGAA/TTCGGCCCAA) complex at 2.94 ångström… · 1GL E2 · binds DG4, DG5

Residues it binds most

DC 14, DG 21 (residue and the binding sites it lines).

Found with

ERI · 3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose
ARI · (2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate
CDR · (2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol
NI · Nickel (II) ion
CO · Cobalt (II) ion
2GL · 4-O-acetyl-2,6-dideoxy-beta-D-galactopyranose
DDA · Beta-D-olivopyranose

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