Ligand · 5RP
5RP · Ribulose-5-phosphate
5RP, Ribulose-5-phosphate (C5 H11 O8 P, 230.1 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (5 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.
- Component
- 5RP
- Formula
- C5 H11 O8 P
- Class
- ligand
- Structures
- 8
- PDB entries
- 5
Binding sites
5RP in 8 structures; the first of them:
- 5LNS · Crystal structure of Arabidopsis thaliana Pdx1-R5P complex · 5RP A401 · binds ASP41, MET60, PRO66, LYS98, ASP119, SER121, VAL123, ARG164 and 8 more
- 7UF0 · RibB from Vibrio cholera bound with D-ribulose-5-phosphate (D-Ru5P) · 5RP A301 · binds ARG38, GLU39, ASP43, ILE66, CYS68, ASN92, THR94, PHE96 and 8 more
- 7UF4 · RibB from Vibrio cholera bound with intermediate 1 of the reaction cycle and… · 5RP A302 · binds ARG38, GLU39, GLU41, ASP43, CYS68, ASN92, THR94, PHE96 and 8 more
- 5LNS · Crystal structure of arabidopsis thaliana PDX1-R5P complex · 5RP A401 · binds ASP41, MET60, PRO66, LYS98, ASP119, SER121, VAL123, ARG164 and 8 more
- 6MC0 · Crystal structure of ribose-5-phosphate isomerase from legionella pneumophila with bound… · 5RP B301 · binds THR26, GLY27, SER28, THR29, ASP79, GLY80, ALA81, ASP82 and 9 more
- 6MU0 · Crystal structure of ribose-5-phosphate isomerase B from mycoplasma genitalium with bound… · 5RP A201 · binds ASP10, HIS11, THR12, TYR45, CSD69, GLY70, THR71, GLY74 and 1 more
- 7UF0 · Ribb from vibrio cholera bound with D-ribulose-5-phosphate (D-RU5P) · 5RP A301 · binds ARG38, GLU39, ASP43, CYS68, THR94, PHE96, ARG151, GLY153 and 4 more
- 7UF4 · Ribb from vibrio cholera bound with intermediate 1 of the reaction cycle and… · 5RP A302 · binds ARG38, GLU39, ASP43, CYS68, ASN92, THR94, PHE96, ARG151 and 5 more
Residues it binds most
GLY 14, ASP 14, SER 9, VAL 8, ARG 9, GLU 5, PHE 12, THR 6, ALA 9, LYS 9 (residue and the binding sites it lines).
Found with
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