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Ligand · R5P

R5P · Ribose-5-phosphate

R5P, Ribose-5-phosphate (C5 H11 O8 P, 230.1 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
R5P
Formula
C5 H11 O8 P
Class
ligand
Structures
3
PDB entries
3

Binding sites

R5P in 3 structures; the first of them:

  • 6ITO · Crystal structure of pyruvate kinase (pyk) from mycobacterium tuberculosis in complex… · R5P A503 · binds LEU233, GLU267, ASN268, HIS345, PRO347, ARG348, THR349, GLY352 and 2 more
  • 6MC0 · Crystal structure of ribose-5-phosphate isomerase from legionella pneumophila with bound… · R5P A301 · binds THR26, GLY27, SER28, THR29, ASP79, GLY80, ALA81, ASP82 and 9 more
  • 7UF1 · Ribb from vibrio cholera bound with D-ribose-5-phosphate (D-R5P) and manganese · R5P A302 · binds ARG38, GLU39, ASP43, CYS68, THR94, PHE96, LEU141, ARG151 and 5 more

Residues it binds most

ARG 5, GLY 6, THR 6, GLU 6, LEU 6, HIS 5, ASN 4, PRO 4, ASP 2, ALA 1 (residue and the binding sites it lines).

Found with

  • 5RP · Ribulose-5-phosphate
  • AMP · Adenosine monophosphate
  • OXL · Oxalate ion
  • MG · Magnesium ion
  • MN · Manganese (II) ion
  • NA · Sodium ion

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