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Ligand · OXL

OXL · Oxalate ion

OXL, Oxalate ion (C2 O4 -2, 88.0 g/mol), in the MolNFT structures on GenesisL1: bound in 79 records (66 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
OXL
Formula
C2 O4 -2
Class
ligand
Structures
79
PDB entries
66

Binding sites

OXL in 79 structures; the first of them:

  • 5D1K · Crystal Structure of UbcH5B in Complex with the RING-U5BR Fragment of AO7 · OXL A203 · binds TRP141, LYS144, TYR145
  • 5D1L · Crystal Structure of UbcH5B in Complex with the RING-U5BR Fragment of AO7 (Y165A) · OXL A402 · binds TRP141, LYS144, TYR145
  • 5D1M · Crystal Structure of UbcH5B in Complex with the RING-U5BR Fragment of AO7 (P199A) · OXL A201 · binds TRP141, TYR145
  • 5EZB · Chicken prestin STAS domain · OXL B802 · binds GLY696, PRO697, ASN700
  • 5FH3 · The structure of rat cytosolic PEPCK variant E89A in complex with oxalic acid and GTP · OXL A703 · binds LYS243, LYS244, HIS264, SER286, ASP311, ARG405
  • 5NPB · Crystal Structure of cjAgd31B (alpha-transglucosylase from Glycoside Hydrolase Family 31)… · OXL A908 · binds HIS731, SER764, ARG798, LYS817
  • 5NPC · Crystal Structure of D412N nucleophile mutant cjAgd31B (alpha-transglucosylase from… · OXL A923 · binds ALA697, HIS731, SER764, ARG798, LYS817
  • 5NPE · Crystal Structure of cjAgd31B (alpha-transglucosylase from Glycoside Hydrolase Family 31)… · OXL A911 · binds HIS731, ASP733, SER764, LYS817
  • 5SCC · Structure of liver pyruvate kinase in complex with anthraqui derivative 57 · OXL A602 · binds ARG85, LYS282, GLU284, MET303, ALA305, ARG306, GLY307, ASP308 and 2 more
  • 5SCF · Structure of liver pyruvate kinase in complex with anthraqui derivative 99 · OXL A602 · binds ARG85, LYS282, GLU284, MET303, ALA305, ARG306, GLY307, ASP308 and 2 more
  • 5SCH · Structure of liver pyruvate kinase in complex with anthraqui derivative 100 · OXL A602 · binds LYS282, GLU284, ALA305, ARG306, GLY307, ASP308, THR340
  • 5WS8 · Pyruvate kinase (PYK) from Mycobacterium tuberculosis in complex with Oxalate · OXL A502 · binds LYS218, GLU220, ALA241, ARG242, GLY243, ASP244, THR276
  • 5WSA · Pyruvate kinase (PYK) from Mycobacterium tuberculosis in complex with Oxalate and… · OXL A503 · binds LYS218, GLU220, ALA241, ARG242, GLY243, ASP244, THR276

Residues it binds most

ARG 315, ASP 312, GLY 304, GLU 300, LYS 307, THR 302, ALA 290, MET 85, HIS 27, PHE 18 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • K · Potassium ion
  • FBP · 1,6-di-O-phosphono-beta-D-fructofuranose
  • EDO · 1,2-ethanediol
  • CL · Chloride ion
  • GOL · Glycerol
  • PG4 · Tetraethylene glycol
  • PEG · Di(hydroxyethyl)ether
  • PO4 · Phosphate ion
  • SO4 · Sulfate ion
  • NA · Sodium ion
  • AMP · Adenosine monophosphate

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