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Ligand · N46

N46 · (2R)-2-hydroxy-3,4-dioxopentyl dihydrogen phosphate

N46, (2R)-2-hydroxy-3,4-dioxopentyl dihydrogen phosphate (C5 H9 O7 P, 212.1 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and…

Component
N46
Formula
C5 H9 O7 P
Class
ligand
Structures
2
PDB entries
1

Binding sites

N46 in 2 structures; the first of them:

  • 7UF4 · RibB from Vibrio cholera bound with intermediate 1 of the reaction cycle and… · N46 A301 · binds ARG38, GLU39, GLU41, ASP43, CYS68, ASN92, THR94, PHE96 and 8 more
  • 7UF4 · Ribb from vibrio cholera bound with intermediate 1 of the reaction cycle and… · N46 A301 · binds ARG38, GLU39, ASP43, CYS68, THR94, PHE96, ARG151, GLY153 and 4 more

Residues it binds most

GLU 2, ARG 2, THR 2, LEU 2, ASP 2, CYS 2, GLY 2, HIS 2, PHE 2, ASN 1 (residue and the binding sites it lines).

Found with

  • 5RP · Ribulose-5-phosphate
  • MN · Manganese (II) ion
  • EDO · 1,2-ethanediol

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