MolNFT v2 · #161512 · protein
AgaD472N-Linear Blood group B type 2 trisaccharide complex structure
6PI0: “AgaD472N-Linear Blood group B type 2 trisaccharide complex structure”. X-ray diffraction at 2.09, 2 ligands (GAL, GLA). MolNFT v2 #161512 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6PI0
- Type
- protein
- Length
- 721 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.09
- Source
- Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
- UniProt
- A0A0H2URQ6
- Ligands
- GAL, GLA
Structure
x-ray diffraction · resolution 2.09 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 721 | — | A0A0H2URQ6 |
Ligands and binding sites
- GAL · beta-D-galactopyranose · sugar · chains A
- GLA · alpha-D-galactopyranose · sugar · chains A
- EDO · 1,2-ethanediol · additive · 7 copies · chains A
- TLA · L(+)-tartaric acid · additive · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PI0 · AGAD472N-linear blood group B type 2 trisaccharide complex structure · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H2URQ6
- Elsewhere: RCSB PDB 6PI0 · PDBe 6PI0 · UniProt A0A0H2URQ6
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