GL1X · GenesisL1 explorer

MolNFT v2 · #160278 · protein + RNA

70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).

6OGF: “70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure…”. Electron microscopy at 3.9. MolNFT v2 #160278 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6OGF
Type
protein + RNA
Length
10,768 residues
Chains
55
Method
electron microscopy
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
3.9
Source
Escherichia coli; SYNTHETIC CONSTRUCT
UniProt
P60422, P60438, D7Z9F6, D7Z9G7, D7Z9H0, D7ZI15, D7ZET0, D7Z9G5, A0A037Y8L6, P0ADY7, B7N179, D7Z9H1, D7ZKU3, B7MAS6, D7ZEN7, D7Z9G0, D7X2Z9, D7Z9G6, D7XH79, P0A7L8, S0YB49, D7Z9G3, D7Z9H3, D7ZGG2, D7Z9P0, B7MGC4, D7Z814, A0A0E2L017, D7ZK99, B7MCS9, D7Z9H7, D7Z9H2, D7ZI17, D7ZAN1, D7Z9G9, D7ZES9, D7Z9F4, B7MCR3, D7ZAN0, H4UQ02, D7Z9G8, D7ZEL4, B7MIU7, D7Z9G4, A0A0E2KXL3, D7Z9F9, D7ZAS2, A0A0E2L2J1, B7MIX0, A0A2S5ZJX2

Structure

electron microscopy · resolution 3.9 · 55 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
b—protein271—P60422
c—protein209—P60438
d—protein201—D7Z9F6
e—protein177—D7Z9G7
f—protein176—D7Z9H0
g—protein149—D7ZI15
j—protein142—D7ZET0
k—protein122—D7Z9G5
l—protein143—A0A037Y8L6
m—protein136—P0ADY7
n—protein120—B7N179
o—protein116—D7Z9H1
p—protein114—D7ZKU3
q—protein117—B7MAS6
r—protein103—D7ZEN7
s—protein110—D7Z9G0
t—protein93—D7X2Z9
u—protein102—D7Z9G6
v—protein94—D7XH79
w—protein75—P0A7L8
x—protein77—S0YB49
y—protein63—D7Z9G3
z—protein58—D7Z9H3
B—protein56—D7ZGG2
C—protein50—D7Z9P0
D—protein46—B7MGC4
E—protein64—D7Z814
F—protein38—A0A0E2L017
G—protein225—D7ZK99
H—protein206—B7MCS9
I—protein205—D7Z9H7
J—protein157—D7Z9H2
K—protein101—D7ZI17
L—protein151—D7ZAN1
M—protein129—D7Z9G9
N—protein127—D7ZES9
O—protein98—D7Z9F4
P—protein116—B7MCR3
Q—protein123—D7ZAN0
R—protein114—H4UQ02
S—protein100—D7Z9G8
T—protein88—D7ZEL4
U—protein82—B7MIU7
V—protein80—D7Z9G4
W—protein65—A0A0E2KXL3
X—protein79—D7Z9F9
Y—protein85—D7ZAS2
Z—protein65—A0A0E2L2J1
a—protein134—B7MIX0
3—rna1539——
1—rna2903——
2—rna120——
5—rna73——
4—rna20——
8—protein361—A0A2S5ZJX2

Compared structures

  • B7MAS6 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L20 (B7MAS6) · a predicted model of the same protein · chain q against A, TM-score 0.98
  • B7N179 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L17 (B7N179) · a predicted model of the same protein · chain n against A, TM-score 0.98
  • B7MCS9 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S3 (B7MCS9) · a predicted model of the same protein · chain H against A, TM-score 0.97
  • B7MCR3 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S11 (B7MCR3) · a predicted model of the same protein · chain P against A, TM-score 0.93
  • B7MIU7 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S16 (B7MIU7) · a predicted model of the same protein · chain U against A, TM-score 0.93
  • B7MGC4 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L34 (B7MGC4) · a predicted model of the same protein · chain D against A, TM-score 0.90
  • B7MIX0 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L1 (B7MIX0) · a predicted model of the same protein · chain a against A, TM-score 0.86

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