GL1X · GenesisL1 explorer

MolNFT v2 · #155626 · protein

LSD1-CoREST-S2101 N5 adduct model

6KGL: “LSD1-CoREST-S2101 N5 adduct model”. X-ray diffraction at 2.7, 2 ligands (DJ0, FAD). MolNFT v2 #155626 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6KGL
Type
protein
Length
793 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
2.7
Source
Homo sapiens
UniProt
O60341, Q9UKL0
Ligands
DJ0, FAD

Structure

x-ray diffraction · resolution 2.7 · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein661—O60341
B—protein132—Q9UKL0

Ligands and binding sites

  • DJ0 · 3-[3,5-bis(fluoranyl)-2-phenylmethoxy-phenyl]propanal · ligand · chains A
  • FAD · Flavin-adenine dinucleotide · ligand · chains A
  • GOL · Glycerol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6KGL · LSD1-corest-S2101 N5 adduct model · the same entry in another collection · chain A against A, TM-score 1.00
  • Q9UKL0 · AlphaFold monomer V2.0 prediction for rest corepressor 1 (Q9UKL0) · a predicted model of the same protein · chain B against A, TM-score 0.97

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