MolNFT v2 · #155524 · protein
Crystal structure of the alpha beta heterodimer of human IDH3 in complex with Ca(2+)
6KDE: “Crystal structure of the alpha beta heterodimer of human IDH3 in complex with Ca(2+)”. X-ray diffraction at 2.999, 1 ligand (CA). MolNFT v2 #155524 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6KDE
- Type
- protein
- Length
- 1,304 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.999
- Source
- Homo sapiens
- UniProt
- P50213, O43837
- Ligands
- CA
Structure
x-ray diffraction · resolution 2.999 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 336 | — | P50213 |
| B, D | — | protein | 316 | — | O43837 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6KDE · Crystal structure of the alpha beta heterodimer of human IDH3 in complex with CA(2+) · the same entry in another collection · chain A against A, TM-score 1.00
- P50213 · AlphaFold monomer V2.0 prediction for isocitrate dehydrogenase [NAD] subunit alpha… · a predicted model of the same protein · chain A against A, TM-score 0.98
- O43837 · AlphaFold monomer V2.0 prediction for isocitrate dehydrogenase [NAD] subunit beta… · a predicted model of the same protein · chain B against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P50213
- Every structure of UniProt O43837
- Elsewhere: RCSB PDB 6KDE · PDBe 6KDE · UniProt P50213 · UniProt O43837
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.