MolNFT v2 · #152621 · protein + DNA
Cryo-EM structure of the human INO80 complex bound to nucleosome
6HTS: “Cryo-EM structure of the human INO80 complex bound to nucleosome”. Electron microscopy at 4.8, 2 ligands (ADP, ZN). MolNFT v2 #152621 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6HTS
- Type
- protein + DNA
- Length
- 4,753 residues
- Chains
- 19
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 4.8
- Source
- Homo sapiens; SYNTHETIC CONSTRUCT
- UniProt
- Q9Y265, Q9Y230, Q9ULG1, Q9H9F9, P68431, P62805, P04908, P06899, Q9C086
- Ligands
- ADP, ZN
Structure
electron microscopy · resolution 4.8 · 18 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 434 | — | Q9Y265 |
| B | — | protein | 429 | — | Q9Y230 |
| C | — | protein | 437 | — | Q9Y265 |
| D, F | — | protein | 434 | — | Q9Y230 |
| E | — | protein | 443 | — | Q9Y265 |
| G | — | protein | 680 | — | Q9ULG1 |
| H | — | protein | 326 | — | Q9H9F9 |
| I | — | protein | 96 | — | P68431 |
| J | — | protein | 82 | — | P62805 |
| K | — | protein | 106 | — | P04908 |
| L | — | protein | 96 | — | P06899 |
| M | — | protein | 99 | — | P68431 |
| N | — | protein | 86 | — | P62805 |
| O | — | protein | 105 | — | P04908 |
| P | — | protein | 94 | — | P06899 |
| R | — | protein | 72 | — | Q9C086 |
| X | — | dna | 150 | — | — |
| Y | — | dna | 150 | — | — |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 6 copies · chains A, B, C, D, E, F
- ZN · Zinc ion · metal · chains R
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6HTS · Cryo-EM structure of the human INO80 complex bound to nucleosome · the same entry in another collection · chain J against J, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y265
- Every structure of UniProt Q9Y230
- Every structure of UniProt Q9ULG1
- Every structure of UniProt Q9H9F9
- Every structure of UniProt P68431
- Every structure of UniProt P62805
- Every structure of UniProt P04908
- Every structure of UniProt P06899
- Every structure of UniProt Q9C086
- Elsewhere: RCSB PDB 6HTS · PDBe 6HTS · UniProt Q9Y265 · UniProt Q9Y230 · UniProt Q9ULG1 · UniProt Q9H9F9 · UniProt P68431 · UniProt P62805 · UniProt P04908 · UniProt P06899 · UniProt Q9C086
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