MolNFT v2 · #151431 · protein

Dark-adapted structure of Archaerhodopsin-3 at 100K

6GUX: “Dark-adapted structure of Archaerhodopsin-3 at 100K”. X-ray diffraction at 1.3, 6 ligands (R16, RET, D12). MolNFT v2 #151431 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6GUX
Type: protein
Length: 241 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.3
Source: Halorubrum sodomense
UniProt: P96787
Ligands: R16, RET, D12, CA, NA, CL

Structure

x-ray diffraction · resolution 1.3 · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	241	—	P96787

Ligands and binding sites

R16 · Hexadecane · ligand · 5 copies · chains A
RET · Retinal · ligand · chains A
D12 · Dodecane · ligand · chains A
CA · Calcium ion · metal · chains A
NA · Sodium ion · metal · chains A
CL · Chloride ion · ion · 3 copies · chains A
DD9 · nonane · additive · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6GUX · Dark-adapted structure of archaerhodopsin-3 at 100K · the same entry in another collection · chain A against A, TM-score 1.00
P96787 · AlphaFold monomer V2.0 prediction for archaerhodopsin-3 (P96787) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P96787
Elsewhere: RCSB PDB 6GUX · PDBe 6GUX · UniProt P96787

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