MolNFT v2 · #146347 · protein
Structure of the nvTRPM2 channel in complex with Ca2+
6CO7: “Structure of the nvTRPM2 channel in complex with Ca2+”. Electron microscopy at 3.07, 5 ligands (POV, CLR, NAG). MolNFT v2 #146347 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6CO7
- Type
- protein
- Length
- 4,244 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.07
- Source
- Nematostella vectensis
- UniProt
- A7T1N0
- Ligands
- POV, CLR, NAG, CA, NA
Structure
electron microscopy · resolution 3.07 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | — | protein | 1061 | — | A7T1N0 |
Ligands and binding sites
- POV · (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate · ligand · 56 copies · chains A, B, D, C
- CLR · Cholesterol · ligand · 4 copies · chains A, B, C, D
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 8 copies · chains A, B, C, D
- CA · Calcium ion · metal · 4 copies · chains A, B, C, D
- NA · Sodium ion · metal · 3 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6CO7 · Structure of the NVTRPM2 channel in complex with CA2+ · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7T1N0
- Elsewhere: RCSB PDB 6CO7 · PDBe 6CO7 · UniProt A7T1N0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.