GL1X · GenesisL1 explorer

MolNFT v2 · #131965 · protein

PanDDA analysis group deposition -- Crystal Structure of DCLRE1A after initial refinement with no ligand modelled (structure 213)

5Q84: “PanDDA analysis group deposition -- Crystal Structure of DCLRE1A after initial refinement with no ligand…”. X-ray diffraction at 1.88, 1 ligand (NI). MolNFT v2 #131965 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
5Q84
Type
protein
Length
341 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
1.88
Source
Homo sapiens
UniProt
Q6PJP8
Ligands
NI

Structure

x-ray diffraction · resolution 1.88 · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein341—Q6PJP8

Ligands and binding sites

  • NI · Nickel (II) ion · metal · chains A
  • MLI · Malonate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5Q84 · Pandda analysis group deposition -- crystal structure of DCLRE1A after initial refinement… · the same entry in another collection · chain A against A, TM-score 1.00
  • Q6PJP8 · AlphaFold monomer V2.0 prediction for DNA cross-link repair 1A protein (Q6PJP8) · a predicted model of the same protein · chain A against A, TM-score 1.00

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