Research workbench
PanDDA analysis group deposition -- Crystal Structure of DCLRE1A after initial refinement with no ligand modelled (structure 213)
Analyse PanDDA analysis group deposition -- Crystal Structure of DCLRE1A after initial… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5Q84
- Type
- protein
- Length
- 341 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.88
- Source
- Homo sapiens
- Molecule
- DCLRE1A
- UniProt
- Q6PJP8
- Ligands
- NI
- Pockets
- 4 · best druggability 0.56
Structure
x-ray diffraction · resolution 1.88 · 1 distinct chain · 33% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DCLRE1A | protein | 341 | 33% helix, 23% strand | Q6PJP8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 217 | 0.56 | 0.79 | 37 | MLI |
| 2 | 71 | 0.37 | 0.78 | 18 | empty |
| 3 | 107 | 0.34 | 0.73 | 18 | empty |
| 4 | 64 | 0.30 | 0.74 | 17 | empty |
Compared structures
- 5Q84 · Pandda analysis group deposition -- crystal structure of DCLRE1A after initial refinement… · the same entry in another collection · chain A against A, TM-score 1.00
- Q6PJP8 · AlphaFold monomer V2.0 prediction for DNA cross-link repair 1A protein (Q6PJP8) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6PJP8
- Elsewhere: RCSB PDB 5Q84 · PDBe 5Q84 · UniProt Q6PJP8
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