MolNFT v2 · #121021 · protein
Structure of the human GluN1/GluN2A LBD in complex with NAM
5H8N: “Structure of the human GluN1/GluN2A LBD in complex with NAM”. X-ray diffraction at 2.5, 2 ligands (5YD, CA). MolNFT v2 #121021 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5H8N
- Type
- protein
- Length
- 560 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.5
- Source
- Homo sapiens
- UniProt
- Q12879, Q05586
- Ligands
- 5YD, CA
Structure
x-ray diffraction · resolution 2.5 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 277 | — | Q12879 |
| B | — | protein | 283 | — | Q05586 |
Ligands and binding sites
- 5YD · 4-[[(4-fluorophenyl)sulfonylamino]methyl]-~{N}-(pyridin-3-ylmethyl)benzamide · ligand · chains A, B
- CA · Calcium ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5H8N · Structure of the human GLUN1/GLUN2A lbd in complex with nam · the same entry in another collection · chain A against A, TM-score 1.00
- Q12879 · AlphaFold monomer V2.0 prediction for glutamate receptor ionotropic, NMDA 2A (Q12879) · a predicted model of the same protein · chain A against A, TM-score 0.97
- Q05586 · AlphaFold monomer V2.0 prediction for glutamate receptor ionotropic, NMDA 1 (Q05586) · a predicted model of the same protein · chain B against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q12879
- Every structure of UniProt Q05586
- Elsewhere: RCSB PDB 5H8N · PDBe 5H8N · UniProt Q12879 · UniProt Q05586
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