MolNFT v1 · #98937 · protein
Crystal structure of HSTING(H232) in complex with C[G(2',5')PA(2',5') P]
4LOI · Stimulator of interferon genes protein: “Crystal structure of HSTING(H232) in complex with C[G(2',5')PA(2',5') P]”. X-ray diffraction, 2 ligands (1YC, PO4), 1 pocket (best druggability 0.83). MolNFT v1 #98937 on GenesisL1: 3D…
- PDB
- 4LOI
- Type
- protein
- Length
- 361 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Stimulator of interferon genes protein
- UniProt
- Q86WV6
- Ligands
- 1YC, PO4
- Pockets
- 1 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Stimulator of interferon genes protein | protein | 178 | 43% helix, 26% strand | Q86WV6 |
| B | Stimulator of interferon genes protein | protein | 183 | 44% helix, 25% strand | Q86WV6 |
Ligands and binding sites
- 1YC · 2-amino-9-[(1R,3R,6R,8R,9R,11S,14R,16R,17R,18R)-16-(6-amino-9H-purin-9-yl)-3,11,17,18-tetrahydroxy-3,11-dioxido-2,4,7,10,12,15-hexaoxa-3,11-diphosphatricyclo[12.2.1.1~6,9~]octadec-8-yl]-1,9-dihydro-6H-purin-6-one · ligand · chains A, B
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 424 | 0.83 | 0.91 | 47 | 1YC |
Interfaces
1 interface between chains.
- A–B · 1873 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 4LOI · Crystal structure of hSTING(H232) in complex with c[G(2',5')pA(2',5')p] · the same entry in another collection · chain A against A, TM-score 1.00
- Q86WV6 · AlphaFold monomer V2.0 prediction for stimulator of interferon genes protein (Q86WV6) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q86WV6
- Elsewhere: RCSB PDB 4LOI · PDBe 4LOI · UniProt Q86WV6
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