MolNFT v1 · #91821 · protein
High energy remote sad structure solution of proteinase K from the 37.8 kev tellurium K edge
4FON: “High energy remote sad structure solution of proteinase K from the 37.8 kev tellurium K edge”. X-ray diffraction, 4 ligands (CA, O, SO4), 1 pocket (best druggability 0.34). MolNFT v1 #91821 on GenesisL1: 3D structure, binding sites…
- PDB
- 4FON
- Type
- protein
- Length
- 279 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Proteinase K
- EC
- 3.4.21.64
- UniProt
- P06873
- Ligands
- CA, O, SO4, TE
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Proteinase K (EC 3.4.21.64) | protein | 279 | 27% helix, 24% strand | P06873 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
- O · Oxygen atom · ion · 5 copies · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
- TE · Tellurium · ion · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 86 | 0.34 | 0.75 | 24 | TE, O |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 4FON · High Energy Remote SAD structure solution of Proteinase K from the 37.8 keV Tellurium K… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06873
- Elsewhere: RCSB PDB 4FON · PDBe 4FON · UniProt P06873
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.