Ligand · O
O · Oxygen atom
O, Oxygen atom (O, 16.0 g/mol), in the MolNFT structures on GenesisL1: bound in 99 records (77 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.
- Component
- O
- Formula
- O
- Class
- ion
- Structures
- 99
- PDB entries
- 77
Binding sites
O in 99 structures; the first of them:
- 5CE9 · structure of tyrosinase from walnut (Juglans regia) · O A403 · binds HIS87, HIS108, HIS117, HIS239, HIS243, PHE260, PHE269, HIS273
- 5FNN · Iron and Selenomethionine containing Iron sulfur cluster repair protein YtfE · O A2033 · binds HIS84, HIS129, MSE130, GLU133, HIS160, HIS204, ILE205, GLU208
- 5FNP · High resolution Zn containing Iron sulfur cluster repair protein YtfE · O A2118 · binds HIS84, HIS129, MET130, GLU133, HIS160, HIS204, GLU208
- 5GUW · Complex of Cytochrome cd1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification… · O B804 · binds HIS207, GLU211, HIS258, HIS259, HIS347
- 5GUX · Cytochrome c-dependent nitric oxide reductase (cNOR) from Pseudomonas aeruginosa in… · O B804 · binds HIS207, GLU211, HIS258, HIS259, HIS347
- 5IMD · Xanthomonas campestris Peroxiredoxin Q - Structure F4 · O A204 · binds PRO41, LYS42, THR45, CSD48, ARG123
- 5JML · X-ray structure of the complex between bovine pancreatic ribonuclease and… · O A202 · binds THR78, HIS105
- 5LI0 · 70S ribosome from Staphylococcus aureus · O A3004 · binds G778, G805, A806
- 5MKM · Crystal Structure of Two-Domain Laccase mutant H165F from Streptomyces griseoflavus · O C501 · binds HIS235, HIS237, HIS288, HIS290, HIS103, HIS157, HIS159
- 5O3K · Crystal Structure of mutant M54L/M64L/M96L of Two-Domain Laccase from Streptomyces… · O A403 · binds HIS235, HIS237, HIS288, HIS290, HIS103, HIS105, HIS157, HIS159
- 5SW6 · Crystal structure of an oxoferryl species of catalase-peroxidase KatG at pH5.6 · O A806 · binds ARG108, TRP111, HIS112, HIS279
- 5SX0 · Crystal structure of an oxoferryl species of catalase-peroxidase KatG at pH7.5 · O A805 · binds ARG108, TRP111, HIS112, HIS279
- 6ELS · Structure of latent apple tyrosinase (MdPPO1) · O A603 · binds HIS86, HIS107, HIS116, HIS238, HIS242, PHE259, PHE268, HIS272
- 6HQI · holo-form of polyphenol oxidase from Solanum lycopersicum · O A603 · binds HIS93, HIS111, HIS120, HIS241, HIS245, PHE279, HIS283
- 6L8S · High resolution crystal structure of crustacean hemocyanin. · O A704 · binds HIS194, HIS198, HIS224, HIS344, HIS348, PHE371, HIS384
- 6NSW · X-ray reduced Catalase 3 From N.Crassa in Cpd I state (0.135 MGy) · O A808 · binds VAL101, HIS102, PHE188, TYR389
- 6NSY · X-ray reduced Catalase 3 From N.Crassa in Cpd I state (0.263 MGy) · O C811 · binds VAL101, HIS102, PHE188
Residues it binds most
HIS 162, GLU 49, ASP 49, PHE 61, ARG 55, ASN 48, CYS 29, VAL 42, LEU 27, LYS 22 (residue and the binding sites it lines).
Found with
- HEM · Protoporphyrin IX containing Fe
- CL · Chloride ion
- CU · Copper (II) ion
- FE · Fe (III) ion
- GOL · Glycerol
- OXY · Oxygen molecule
- EDO · 1,2-ethanediol
- NA · Sodium ion
- MG · Magnesium ion
- SO4 · Sulfate ion
- ACT · Acetate ion
- MGD · 2-amino-5,6-dimercapto-7-methyl-3,7,8A,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide
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