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MolNFT v1 · #82177 · protein

A binary complex betwwen bovine pancreatic trypsin and a engineered mutant trypsin inhibitor

3VEQ · Cationic trypsin: “A binary complex betwwen bovine pancreatic trypsin and a engineered mutant trypsin inhibitor”. X-ray diffraction, 1 ligand (CA), 3 pockets (best druggability 0.62). MolNFT v1 #82177 on GenesisL1: 3D structure…

PDB
3VEQ
Type
protein
Length
398 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Cationic trypsin; Chymotrypsin inhibitor 3
EC
3.4.21.4
UniProt
P00760, P10822
Ligands
CA
Pockets
3 · best druggability 0.62

Structure

x-ray diffraction · 2 distinct chains · 7% helix, 37% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
BCationic trypsin (EC 3.4.21.4)protein22310% helix, 34% strandP00760
AChymotrypsin inhibitor 3protein1752% helix, 42% strandP10822

Ligands and binding sites

  • CA · Calcium ion · metal · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
13420.620.7937empty
2840.580.8724empty
3840.320.7421empty

Interfaces

1 interface between chains.

  • B–A · 1202 Ų buried · 23 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 disulfide (disulfide).

Compared structures

  • 3VEQ · A binary complex betwwen bovine pancreatic trypsin and a engineered mutant trypsin… · the same entry in another collection · chain A against A, TM-score 1.00
  • 1TNL · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain B against A, TM-score 1.00
  • 1TNI · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain B against A, TM-score 1.00
  • 1TNJ · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain B against A, TM-score 1.00
  • 1TNG · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain B against A, TM-score 1.00
  • 1TNH · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain B against A, TM-score 1.00
  • 1TNK · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain B against A, TM-score 1.00
  • P10822 · AlphaFold monomer V2.0 prediction for chymotrypsin inhibitor 3 (P10822) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

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