Research workbench
A binary complex betwwen bovine pancreatic trypsin and a engineered mutant trypsin inhibitor
Analyse A binary complex betwwen bovine pancreatic trypsin and a engineered mutant… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3VEQ
- Type
- protein
- Length
- 398 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cationic trypsin; Chymotrypsin inhibitor 3
- EC
- 3.4.21.4
- UniProt
- P00760, P10822
- Ligands
- CA
- Pockets
- 3 · best druggability 0.62
Structure
x-ray diffraction · 2 distinct chains · 7% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Cationic trypsin (EC 3.4.21.4) | protein | 223 | 10% helix, 34% strand | P00760 |
| A | Chymotrypsin inhibitor 3 | protein | 175 | 2% helix, 42% strand | P10822 |
Ligands and binding sites
- CA · Calcium ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 342 | 0.62 | 0.79 | 37 | empty |
| 2 | 84 | 0.58 | 0.87 | 24 | empty |
| 3 | 84 | 0.32 | 0.74 | 21 | empty |
Interfaces
1 interface between chains.
- B–A · 1202 Ų buried · 23 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 disulfide (disulfide).
Compared structures
- 3VEQ · A binary complex betwwen bovine pancreatic trypsin and a engineered mutant trypsin… · the same entry in another collection · chain A against A, TM-score 1.00
- 1TNL · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain B against A, TM-score 1.00
- 1TNI · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain B against A, TM-score 1.00
- 1TNJ · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain B against A, TM-score 1.00
- 1TNG · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain B against A, TM-score 1.00
- 1TNH · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain B against A, TM-score 1.00
- 1TNK · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain B against A, TM-score 1.00
- P10822 · AlphaFold monomer V2.0 prediction for chymotrypsin inhibitor 3 (P10822) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00760
- Every structure of UniProt P10822
- Elsewhere: RCSB PDB 3VEQ · PDBe 3VEQ · UniProt P00760 · UniProt P10822
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