MolNFT v1 · #7826 · protein

Concanavalin a complexed with methyl alpha-D-glucopyranoside

1GIC: “Concanavalin a complexed with methyl alpha-D-glucopyranoside”. X-ray diffraction, 3 ligands (GYP, MN, CA). MolNFT v1 #7826 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1GIC
Type: protein
Length: 474 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Concanavalin a
UniProt: P02866
Ligands: GYP, MN, CA

Structure

x-ray diffraction · 1 distinct chain · 4% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Concanavalin a	protein	237	4% helix, 50% strand	P02866

Ligands and binding sites

GYP · methyl alpha-D-glucopyranoside · ligand · 2 copies · chains A, B
MN · Manganese (II) ion · metal · 2 copies · chains A, B
CA · Calcium ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 1155 Å² buried · 17 hydrogen bonds · protein-protein

Compared structures

1GIC · Concanavalin a complexed with methyl alpha-D-glucopyranoside · the same entry in another collection · chain A against A, TM-score 1.00
P02866 · AlphaFold monomer V2.0 prediction for concanavalin-a (P02866) · a predicted model of the same protein · chain B against A, TM-score 0.50

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02866
Elsewhere: RCSB PDB 1GIC · PDBe 1GIC · UniProt P02866

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