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MolNFT v1 · #73311 · protein

Crystal structure of the human BETA2 adrenergic receptor in complex with the inverse agonist ici 118,551

3NY8 · Beta-2 adrenergic receptor, lysozyme: “Crystal structure of the human BETA2 adrenergic receptor in complex with the inverse agonist ici 118,551”. X-ray diffraction, 3 ligands (CLR, JRZ, OLA), 4 pockets (best druggability 0.79).…

PDB
3NY8
Type
protein
Length
439 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Beta-2 adrenergic receptor, lysozyme
UniProt
P07550, P00720
Ligands
CLR, JRZ, OLA
Pockets
4 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 74% helix, 3% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ABeta-2 adrenergic receptor, lysozymeprotein43974% helix, 3% strandP07550, P00720

Ligands and binding sites

  • CLR · Cholesterol · ligand · 2 copies · chains A
  • JRZ · (2S,3S)-1-[(7-methyl-2,3-dihydro-1H-inden-4-yl)oxy]-3-[(1-methylethyl)amino]butan-2-ol · ligand · chains A
  • OLA · Oleic acid · ligand · chains A
  • OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 2 copies · chains A
  • PGE · Triethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
15510.790.8553JRZ
22590.640.8127empty
32470.510.7530empty
41410.440.7518empty

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

  • 3NY8 · Crystal structure of the human beta2 adrenergic receptor in complex with the inverse… · the same entry in another collection · chain A against A, TM-score 1.00
  • P07550 · AlphaFold monomer V2.0 prediction for beta-2 adrenergic receptor (P07550) · a predicted model of the same protein · chain A against A, TM-score 0.66

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