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Crystal structure of the human BETA2 adrenergic receptor in complex with the inverse agonist ici 118,551

Analyse Crystal structure of the human BETA2 adrenergic receptor in complex with the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
3NY8
Type
protein
Length
439 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Beta-2 adrenergic receptor, lysozyme
UniProt
P07550, P00720
Ligands
CLR, JRZ, OLA
Pockets
4 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 74% helix, 3% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ABeta-2 adrenergic receptor, lysozymeprotein43974% helix, 3% strandP07550, P00720

Ligands and binding sites

  • CLR · Cholesterol · ligand · 2 copies · chains A
  • JRZ · (2S,3S)-1-[(7-methyl-2,3-dihydro-1H-inden-4-yl)oxy]-3-[(1-methylethyl)amino]butan-2-ol · ligand · chains A
  • OLA · Oleic acid · ligand · chains A
  • OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 2 copies · chains A
  • PGE · Triethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
15510.790.8553JRZ
22590.640.8127empty
32470.510.7530empty
41410.440.7518empty

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

  • 3NY8 · Crystal structure of the human beta2 adrenergic receptor in complex with the inverse… · the same entry in another collection · chain A against A, TM-score 1.00
  • P07550 · AlphaFold monomer V2.0 prediction for beta-2 adrenergic receptor (P07550) · a predicted model of the same protein · chain A against A, TM-score 0.66

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