MolNFT v1 · #69470 · protein
Cfms tyrosine kinase in complex with 4-cyano-1H-imidazole-2-carboxylic acid (2-cyclohex-1-enyl-4-piperidin-4-yl-phenyl)-amide
3KRJ · Macrophage colony-stimulating factor 1 receptor, basic…: “Cfms tyrosine kinase in complex with 4-cyano-1H-imidazole-2-carboxylic acid…”. X-ray diffraction, 1 ligand (KRJ), 2 pockets (best druggability 0.73). MolNFT v1 #69470 on…
- PDB
- 3KRJ
- Type
- protein
- Length
- 304 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Macrophage colony-stimulating factor 1 receptor, basic fibroblast growth factor receptor 1
- EC
- 2.7.10.1
- UniProt
- P07333, P11362
- Ligands
- KRJ
- Pockets
- 2 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Macrophage colony-stimulating factor 1 receptor, basic fibroblast growth factor receptor 1 (EC 2.7.10.1) | protein | 304 | 39% helix, 18% strand | P07333, P11362 |
Ligands and binding sites
- KRJ · 4-cyano-N-(2-cyclohex-1-en-1-yl-4-piperidin-4-ylphenyl)-1H-imidazole-2-carboxamide · ligand · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 242 | 0.73 | 0.87 | 40 | KRJ |
| 2 | 89 | 0.32 | 0.73 | 22 | empty |
Compared structures
- 3KRJ · cFMS tyrosine kinase in complex with 4-Cyano-1H-imidazole-2-carboxylic acid… · the same entry in another collection · chain A against A, TM-score 1.00
- P07333 · AlphaFold monomer V2.0 prediction for macrophage colony-stimulating factor 1 receptor… · a predicted model of the same protein · chain A against A, TM-score 0.92
- P11362 · AlphaFold monomer V2.0 prediction for fibroblast growth factor receptor 1 (P11362) · a predicted model of the same protein · chain A against A, TM-score 0.84
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07333
- Every structure of UniProt P11362
- Elsewhere: RCSB PDB 3KRJ · PDBe 3KRJ · UniProt P07333 · UniProt P11362
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