MolNFT v1 · #57493 · protein

Crystal structure of the complex of the interacting regions of DOCK2 and ELMO1

3A98 · Dedicator of cytokinesis protein 2: “Crystal structure of the complex of the interacting regions of DOCK2 and ELMO1”. X-ray diffraction, 9 pockets (best druggability 0.72). MolNFT v1 #57493 on GenesisL1: 3D structure, binding sites…

PDB: 3A98
Type: protein
Length: 666 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dedicator of cytokinesis protein 2; Engulfment and cell motility protein 1
UniProt: Q92608, Q92556
Pockets: 9 · best druggability 0.72

Structure

x-ray diffraction · 4 distinct chains · 42% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Dedicator of cytokinesis protein 2	protein	157	45% helix, 23% strand	Q92608
B	Engulfment and cell motility protein 1	protein	190	38% helix, 21% strand	Q92556
C	Dedicator of cytokinesis protein 2	protein	152	45% helix, 24% strand	Q92608
D	Engulfment and cell motility protein 1	protein	167	43% helix, 19% strand	Q92556

Pockets

9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	210	0.72	0.88	40	empty
2	708	0.71	0.77	76	empty
3	254	0.58	0.79	39	empty
4	221	0.45	0.73	32	empty
5	107	0.37	0.74	18	empty

Interfaces

6 interfaces between chains.

C–D · 2496 Å² buried · 19 hydrogen bonds · protein-protein
A–B · 2430 Å² buried · 22 hydrogen bonds · protein-protein
A–D · 519 Å² buried · 6 hydrogen bonds · protein-protein
B–C · 394 Å² buried · 6 hydrogen bonds · protein-protein
A–C · 156 Å² buried · 1 hydrogen bond · protein-protein

Modifications

Observed in the structure: 18 modified (engineered).

Compared structures

3A98 · Crystal structure of the complex of the interacting regions of DOCK2 and ELMO1 · the same entry in another collection · chain D against D, TM-score 1.00
Q92556 · AlphaFold monomer V2.0 prediction for engulfment and cell motility protein 1 (Q92556) · a predicted model of the same protein · chain D against A, TM-score 0.90
Q92608 · AlphaFold monomer V2.0 prediction for dedicator of cytokinesis protein 2 (Q92608) · a predicted model of the same protein · chain A against A, TM-score 0.85

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q92608
Every structure of UniProt Q92556
Elsewhere: RCSB PDB 3A98 · PDBe 3A98 · UniProt Q92608 · UniProt Q92556

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.