Research workbench
Crystal structure of the complex of the interacting regions of DOCK2 and ELMO1
Analyse Crystal structure of the complex of the interacting regions of DOCK2 and ELMO1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3A98
- Type
- protein
- Length
- 666 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dedicator of cytokinesis protein 2; Engulfment and cell motility protein 1
- UniProt
- Q92608, Q92556
- Pockets
- 9 · best druggability 0.72
Structure
x-ray diffraction · 4 distinct chains · 42% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dedicator of cytokinesis protein 2 | protein | 157 | 45% helix, 23% strand | Q92608 |
| B | Engulfment and cell motility protein 1 | protein | 190 | 38% helix, 21% strand | Q92556 |
| C | Dedicator of cytokinesis protein 2 | protein | 152 | 45% helix, 24% strand | Q92608 |
| D | Engulfment and cell motility protein 1 | protein | 167 | 43% helix, 19% strand | Q92556 |
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 210 | 0.72 | 0.88 | 40 | empty |
| 2 | 708 | 0.71 | 0.77 | 76 | empty |
| 3 | 254 | 0.58 | 0.79 | 39 | empty |
| 4 | 221 | 0.45 | 0.73 | 32 | empty |
| 5 | 107 | 0.37 | 0.74 | 18 | empty |
Interfaces
6 interfaces between chains.
- C–D · 2496 Ų buried · 19 hydrogen bonds · protein-protein
- A–B · 2430 Ų buried · 22 hydrogen bonds · protein-protein
- A–D · 519 Ų buried · 6 hydrogen bonds · protein-protein
- B–C · 394 Ų buried · 6 hydrogen bonds · protein-protein
- A–C · 156 Ų buried · 1 hydrogen bond · protein-protein
Modifications
Observed in the structure: 18 modified (engineered).
Compared structures
- 3A98 · Crystal structure of the complex of the interacting regions of DOCK2 and ELMO1 · the same entry in another collection · chain D against D, TM-score 1.00
- Q92556 · AlphaFold monomer V2.0 prediction for engulfment and cell motility protein 1 (Q92556) · a predicted model of the same protein · chain D against A, TM-score 0.90
- Q92608 · AlphaFold monomer V2.0 prediction for dedicator of cytokinesis protein 2 (Q92608) · a predicted model of the same protein · chain A against A, TM-score 0.85
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q92608
- Every structure of UniProt Q92556
- Elsewhere: RCSB PDB 3A98 · PDBe 3A98 · UniProt Q92608 · UniProt Q92556
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