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MolNFT v1 · #47983 · protein

Complex of aldose reductase with NADP+ and simaltaneously bound competetive inhibitors fidarestat and IDD594. concentration of fidarestat in soaking solution is equal to concentration of IDD594.

2PF8: “Complex of aldose reductase with NADP+ and simaltaneously bound competetive inhibitors fidarestat and IDD594.…”. X-ray diffraction, 4 ligands (NDP, LDT, FID), 1 pocket (best druggability 0.74). MolNFT v1 #47983 on GenesisL1: 3D…

PDB
2PF8
Type
protein
Length
316 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Aldose reductase
EC
1.1.1.21
UniProt
P15121
Ligands
NDP, LDT, FID, CL
Pockets
1 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 15% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AAldose reductase (EC 1.1.1.21)protein31638% helix, 15% strandP15121

Ligands and binding sites

  • NDP · Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate · ligand · chains A
  • LDT · Idd594 · ligand · chains A
  • FID · (2S,4S)-2-aminoformyl-6-fluoro-spiro[chroman-4,4'-imidazolidine]-2',5'-dione · ligand · chains A
  • CL · Chloride ion · ion · chains A
  • CIT · Citric acid · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
13190.740.8545NDP, LDT, FID

Modifications

Observed in the structure: 2 covalent (additive adduct).

Compared structures

  • 2PF8 · Complex of Aldose Reductase with NADP+ and simaltaneously bound competetive inhibitors… · the same entry in another collection · chain A against A, TM-score 1.00
  • P15121 · AlphaFold monomer V2.0 prediction for aldo-keto reductase family 1 member B1 (P15121) · a predicted model of the same protein · chain A against A, TM-score 1.00

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