MolNFT v1 · #42672 · protein
Human NEDD4 3RD ww domain complex with ebola zaire virus matrix protein VP40 derived peptide ilptappeymea
2KQ0 · E3 ubiquitin-protein ligase NEDD4: “Human NEDD4 3RD ww domain complex with ebola zaire virus matrix protein VP40 derived peptide ilptappeymea”. Solution nmr. MolNFT v1 #42672 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 2KQ0
- Type
- protein
- Length
- 44 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- E3 ubiquitin-protein ligase NEDD4; 12-mer from matrix protein VP40
- EC
- 6.3.2.-
- UniProt
- P46934, Q05128
Structure
solution nmr · 2 distinct chains · 0% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2.-) | protein | 35 | 0% helix, 43% strand | P46934 |
| B | 12-mer from matrix protein VP40 | protein | 9 | 0% helix, 0% strand | Q05128 |
Interfaces
1 interface between chains.
- A–B · 393 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 2KQ0 · Human NEDD4 3rd WW Domain Complex with Ebola Zaire Virus Matrix Protein VP40 Derived… · the same entry in another collection · chain A against A, TM-score 1.00
- P46934 · AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase NEDD4 (P46934) · a predicted model of the same protein · chain A against A, TM-score 0.68
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P46934
- Every structure of UniProt Q05128
- Elsewhere: RCSB PDB 2KQ0 · PDBe 2KQ0 · UniProt P46934 · UniProt Q05128
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