Research workbench
Human NEDD4 3RD ww domain complex with ebola zaire virus matrix protein VP40 derived peptide ilptappeymea
Analyse Human NEDD4 3RD ww domain complex with ebola zaire virus matrix protein VP40… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2KQ0
- Type
- protein
- Length
- 44 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- E3 ubiquitin-protein ligase NEDD4; 12-mer from matrix protein VP40
- EC
- 6.3.2.-
- UniProt
- P46934, Q05128
Structure
solution nmr · 2 distinct chains · 0% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2.-) | protein | 35 | 0% helix, 43% strand | P46934 |
| B | 12-mer from matrix protein VP40 | protein | 9 | 0% helix, 0% strand | Q05128 |
Interfaces
1 interface between chains.
- A–B · 393 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 2KQ0 · Human NEDD4 3rd WW Domain Complex with Ebola Zaire Virus Matrix Protein VP40 Derived… · the same entry in another collection · chain A against A, TM-score 1.00
- P46934 · AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase NEDD4 (P46934) · a predicted model of the same protein · chain A against A, TM-score 0.68
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P46934
- Every structure of UniProt Q05128
- Elsewhere: RCSB PDB 2KQ0 · PDBe 2KQ0 · UniProt P46934 · UniProt Q05128
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