MolNFT v1 · #27535 · protein
The crystal structure of the zb domain from the RNA editing enzyme ADAR1
1XMK · Double-stranded RNA-specific adenosine deaminase: “The crystal structure of the zb domain from the RNA editing enzyme ADAR1”. X-ray diffraction, 3 ligands (CD, NI, CL). MolNFT v1 #27535 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1XMK
- Type
- protein
- Length
- 79 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Double-stranded RNA-specific adenosine deaminase
- EC
- 3.5.4.-
- UniProt
- P55265
- Ligands
- CD, NI, CL
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Double-stranded RNA-specific adenosine deaminase (EC 3.5.4.-) | protein | 79 | 56% helix, 13% strand | P55265 |
Ligands and binding sites
- CD · Cadmium ion · metal · 2 copies · chains A
- NI · Nickel (II) ion · metal · chains A
- CL · Chloride ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 1XMK · The Crystal structure of the Zb domain from the RNA editing enzyme ADAR1 · the same entry in another collection · chain A against A, TM-score 1.00
- P55265 · AlphaFold monomer V2.0 prediction for double-stranded RNA-specific adenosine deaminase… · a predicted model of the same protein · chain A against A, TM-score 0.75
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P55265
- Elsewhere: RCSB PDB 1XMK · PDBe 1XMK · UniProt P55265
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