Research workbench
The crystal structure of the zb domain from the RNA editing enzyme ADAR1
Analyse The crystal structure of the zb domain from the RNA editing enzyme ADAR1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1XMK
- Type
- protein
- Length
- 79 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Double-stranded RNA-specific adenosine deaminase
- EC
- 3.5.4.-
- UniProt
- P55265
- Ligands
- CD, NI, CL
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Double-stranded RNA-specific adenosine deaminase (EC 3.5.4.-) | protein | 79 | 56% helix, 13% strand | P55265 |
Ligands and binding sites
- CD · Cadmium ion · metal · 2 copies · chains A
- NI · Nickel (II) ion · metal · chains A
- CL · Chloride ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 1XMK · The Crystal structure of the Zb domain from the RNA editing enzyme ADAR1 · the same entry in another collection · chain A against A, TM-score 1.00
- P55265 · AlphaFold monomer V2.0 prediction for double-stranded RNA-specific adenosine deaminase… · a predicted model of the same protein · chain A against A, TM-score 0.75
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P55265
- Elsewhere: RCSB PDB 1XMK · PDBe 1XMK · UniProt P55265
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