MolNFT v1 · #190677 · protein
Structure of the complex of camel peptidoglycan recognition protein- short (pgrp-S) with heptanoic acid at 2.15 a resolution.
7XU8: “Structure of the complex of camel peptidoglycan recognition protein- short (pgrp-S) with heptanoic acid at…”. X-ray diffraction, 4 ligands (PEO, SHV, NA). MolNFT v1 #190677 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7XU8
- Type
- protein
- Length
- 664 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9GK12
- Ligands
- PEO, SHV, NA, CO3
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | — | protein | 166 | — | Q9GK12 |
Ligands and binding sites
- PEO · Hydrogen peroxide · ligand · 9 copies · chains A, B, C, D
- SHV · Heptanoic acid · ligand · chains A, B
- NA · Sodium ion · metal · chains A, C
- CO3 · Carbonate ion · ion · chains A, D
- EDO · 1,2-ethanediol · additive · 4 copies · chains A, C, D
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7XU8 · Structure of the complex of camel peptidoglycan recognition protein-short (PGRP-S) with… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9GK12 · AlphaFold monomer V2.0 prediction for peptidoglycan recognition protein 1 (Q9GK12) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9GK12
- Elsewhere: RCSB PDB 7XU8 · PDBe 7XU8 · UniProt Q9GK12
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