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Structure of the complex of camel peptidoglycan recognition protein- short (pgrp-S) with heptanoic acid at 2.15 a resolution.

Analyse Structure of the complex of camel peptidoglycan recognition protein- short… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7XU8
Type: protein
Length: 664 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q9GK12
Ligands: PEO, SHV, NA, CO3

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	—	protein	166	—	Q9GK12

Ligands and binding sites

PEO · Hydrogen peroxide · ligand · 9 copies · chains A, B, C, D
SHV · Heptanoic acid · ligand · chains A, B
NA · Sodium ion · metal · chains A, C
CO3 · Carbonate ion · ion · chains A, D
EDO · 1,2-ethanediol · additive · 4 copies · chains A, C, D
MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7XU8 · Structure of the complex of camel peptidoglycan recognition protein-short (PGRP-S) with… · the same entry in another collection · chain A against A, TM-score 1.00
Q9GK12 · AlphaFold monomer V2.0 prediction for peptidoglycan recognition protein 1 (Q9GK12) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

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Every structure of UniProt Q9GK12
Elsewhere: RCSB PDB 7XU8 · PDBe 7XU8 · UniProt Q9GK12

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