MolNFT v1 · #189787 · protein + DNA
NUA4 bound to the nucleosome
7VVZ: “NUA4 bound to the nucleosome”. Electron microscopy, 3 ligands (ATP, CMC, MG). MolNFT v1 #189787 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7VVZ
- Type
- protein + DNA
- Length
- 7,030 residues
- Chains
- 21
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P47128, P38806, P43572, Q08649, Q06337, P80428, P60010, P53201, P38811
- Ligands
- ATP, CMC, MG
Structure
electron microscopy · 20 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| Y | — | protein | 46 | — | P47128 |
| V | — | protein | 113 | — | P38806 |
| T | — | protein | 274 | — | P43572 |
| O | — | protein | 96 | — | — |
| Q | — | protein | 80 | — | — |
| S, N | — | protein | 106 | — | — |
| U | — | protein | 92 | — | — |
| A | — | protein | 94 | — | — |
| B | — | protein | 87 | — | — |
| D | — | protein | 93 | — | — |
| P | — | protein | 270 | — | Q08649 |
| W | — | dna | 180 | — | — |
| I | — | dna | 179 | — | — |
| X | — | protein | 9 | — | — |
| E | — | protein | 415 | — | Q06337 |
| F | — | protein | 414 | — | P80428 |
| G | — | protein | 357 | — | P60010 |
| K | — | protein | 237 | — | P53201 |
| H | — | protein | 269 | — | P43572 |
| L | — | protein | 3513 | — | P38811 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 2 copies · chains F, G
- CMC · Carboxymethyl coenzyme *A · ligand · chains B, P
- MG · Magnesium ion · metal · 2 copies · chains F, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7VVZ · NuA4 bound to the nucleosome · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P47128
- Every structure of UniProt P38806
- Every structure of UniProt P43572
- Every structure of UniProt Q08649
- Every structure of UniProt Q06337
- Every structure of UniProt P80428
- Every structure of UniProt P60010
- Every structure of UniProt P53201
- Every structure of UniProt P38811
- Elsewhere: RCSB PDB 7VVZ · PDBe 7VVZ · UniProt P47128 · UniProt P38806 · UniProt P43572 · UniProt Q08649 · UniProt Q06337 · UniProt P80428 · UniProt P60010 · UniProt P53201 · UniProt P38811
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