MolNFT v1 · #189462 · protein
Anion free form of light-driven chloride ion-pumping rhodopsin, nm-R3, structure determined by serial femtosecond crystallography at sacla
7VGV: “Anion free form of light-driven chloride ion-pumping rhodopsin, nm-R3, structure determined by serial…”. X-ray diffraction, 4 ligands (RET, C14, R16). MolNFT v1 #189462 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7VGV
- Type
- protein
- Length
- 791 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- W8VZW3
- Ligands
- RET, C14, R16, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 264 | — | W8VZW3 |
| B | — | protein | 263 | — | W8VZW3 |
Ligands and binding sites
- RET · Retinal · ligand · 3 copies · chains A, B, C
- C14 · Tetradecane · ligand · 2 copies · chains A, B
- R16 · Hexadecane · ligand · chains A
- CL · Chloride ion · ion · 2 copies · chains C
- HEX · Hexane · additive · 6 copies · chains C, A, B
- DD9 · nonane · additive · 3 copies · chains A, B
- OCT · N-octane · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7VGV · Anion free form of light-driven chloride ion-pumping rhodopsin, NM-R3, structure… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt W8VZW3
- Elsewhere: RCSB PDB 7VGV · PDBe 7VGV · UniProt W8VZW3
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