MolNFT v1 · #188895 · protein
Integrin ALAPHIIBBETA3 complex with BMS4.2
7UKT: “Integrin ALAPHIIBBETA3 complex with BMS4.2”. X-ray diffraction, 8 ligands (NJF, NAG, MAN). MolNFT v1 #188895 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7UKT
- Type
- protein
- Length
- 2,702 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P08514, P05106
- Ligands
- NJF, NAG, MAN, BMA, CA, MN, SO4, CL
Structure
x-ray diffraction · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 454 | — | P08514 |
| B | — | protein | 466 | — | P05106 |
| C | — | protein | 453 | — | P08514 |
| D | — | protein | 471 | — | P05106 |
| E | — | protein | 214 | — | — |
| F, L | — | protein | 214 | — | — |
| H | — | protein | 216 | — | — |
Ligands and binding sites
- NJF · (1-{[(5S)-3-(4-carbamimidoylphenyl)-4,5-dihydro-1,2-oxazol-5-yl]methyl}piperidin-4-yl)acetic acid · ligand · 2 copies · chains A, B, C, D
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 10 copies · chains A, B, C, D
- MAN · alpha-D-mannopyranose · sugar · 3 copies · chains A, C
- BMA · beta-D-mannopyranose · sugar · 2 copies
- CA · Calcium ion · metal · 8 copies · chains A, C
- MN · Manganese (II) ion · metal · 6 copies · chains B, D
- SO4 · Sulfate ion · ion · 9 copies · chains A, C, L
- CL · Chloride ion · ion · 2 copies · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7UKT · Integrin alpha IIB beta3 complex with BMS4.2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08514
- Every structure of UniProt P05106
- Elsewhere: RCSB PDB 7UKT · PDBe 7UKT · UniProt P08514 · UniProt P05106
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