MolNFT v1 · #188628 · protein + DNA
RFC:PCNA bound to dsdna with a ssdna gap of six nucleotides
7U1A: “RFC:PCNA bound to dsdna with a ssdna gap of six nucleotides”. Electron microscopy, 3 ligands (AGS, ADP, MG). MolNFT v1 #188628 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7U1A
- Type
- protein + DNA
- Length
- 2,759 residues
- Chains
- 11
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P38630, P40339, P38629, P40348, P38251, P15873
- Ligands
- AGS, ADP, MG
Structure
electron microscopy · 11 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 617 | — | P38630 |
| B | — | protein | 319 | — | P40339 |
| C | — | protein | 327 | — | P38629 |
| D | — | protein | 340 | — | P40348 |
| E | — | protein | 337 | — | P38251 |
| F | — | protein | 255 | — | P15873 |
| G | — | protein | 257 | — | P15873 |
| H | — | protein | 253 | — | P15873 |
| I | — | dna | 15 | — | — |
| J | — | dna | 30 | — | — |
| K | — | dna | 9 | — | — |
Ligands and binding sites
- AGS · Phosphothiophosphoric acid-adenylate ester · ligand · 3 copies · chains A, B, C, D, E
- ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains B, C, A, E
- MG · Magnesium ion · metal · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7U1A · RFC:PCNA bound to dsDNA with a ssDNA gap of six nucleotides · the same entry in another collection · chain K against K, TM-score 1.00
- P38251 · AlphaFold monomer V2.0 prediction for replication factor C subunit 5 (P38251) · a predicted model of the same protein · chain E against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38630
- Every structure of UniProt P40339
- Every structure of UniProt P38629
- Every structure of UniProt P40348
- Every structure of UniProt P38251
- Every structure of UniProt P15873
- Elsewhere: RCSB PDB 7U1A · PDBe 7U1A · UniProt P38630 · UniProt P40339 · UniProt P38629 · UniProt P40348 · UniProt P38251 · UniProt P15873
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