MolNFT v1 · #188614 · protein
Crystal structure of a human calcineurin a - calcineurin B fusion bound to FKBP12 and fk-520
7U0T · SERINE/THREONINE-protein phosphatase 2B catalytic subunit…: “Crystal structure of a human calcineurin a - calcineurin B fusion bound to FKBP12 and fk-520”. X-ray diffraction, 2 ligands (KXX, CA), 3 pockets (best druggability 0.80).…
- PDB
- 7U0T
- Type
- protein
- Length
- 297 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SERINE/THREONINE-protein phosphatase 2B catalytic subunit gamma ISOFORM,CALCINEURIN…
- EC
- 3.1.3.16, 5.2.1.8
- UniProt
- P48454, P63098, Q0VDC6
- Ligands
- KXX, CA
- Pockets
- 3 · best druggability 0.80
Structure
x-ray diffraction · 2 distinct chains · 44% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SERINE/THREONINE-protein phosphatase 2B catalytic subunit gamma ISOFORM,CALCINEURIN subunit B type 1 fusion (EC 3.1.3.16) | protein | 190 | 62% helix, 4% strand | P48454, P63098 |
| B | Peptidylprolyl isomerase (EC 5.2.1.8) | protein | 107 | 14% helix, 40% strand | Q0VDC6 |
Ligands and binding sites
- KXX · (3s,4r,5s,8r,9e,12s,14s,15r,16s,18r,19r,22r,26as)-8-ethyl-5,19-dihydroxy-3-{(1E)-1-[(1R,3R,4R)-4-hydroxy-3-methoxycyclohexyl]prop-1-en-2-yl}-14,16-dimethoxy-4, 10,12,18-tetramethyl-5,6,8,11,12,13,14,15,16,17,18,19, 24,25,26,26A-hexadecahydro-3H-15,19-epoxypyrido[2,1-c][1,4]oxazacyclotricosine-1,7,20,21(4H,23H)-tetrone · ligand · chains A, B
- CA · Calcium ion · metal · 4 copies · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 665 | 0.80 | 0.84 | 54 | KXX |
| 2 | 83 | 0.32 | 0.74 | 14 | empty |
| 3 | 62 | 0.29 | 0.74 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 803 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 7U0T · Crystal Structure of a human Calcineurin A - Calcineurin B fusion bound to FKBP12 and… · the same entry in another collection · chain A against A, TM-score 1.00
- P63098 · AlphaFold monomer V2.0 prediction for calcineurin subunit B type 1 (P63098) · a predicted model of the same protein · chain A against A, TM-score 0.81
- P48454 · AlphaFold monomer V2.0 prediction for SERINE/THREONINE-protein phosphatase 2B catalytic… · a predicted model of the same protein · chain A against A, TM-score 0.35
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P48454
- Every structure of UniProt P63098
- Every structure of UniProt Q0VDC6
- Elsewhere: RCSB PDB 7U0T · PDBe 7U0T · UniProt P48454 · UniProt P63098 · UniProt Q0VDC6
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