GL1X · GenesisL1 explorer

Research workbench

Crystal structure of a human calcineurin a - calcineurin B fusion bound to FKBP12 and fk-520

Analyse Crystal structure of a human calcineurin a - calcineurin B fusion bound to… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
7U0T
Type
protein
Length
297 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
SERINE/THREONINE-protein phosphatase 2B catalytic subunit gamma ISOFORM,CALCINEURIN…
EC
3.1.3.16, 5.2.1.8
UniProt
P48454, P63098, Q0VDC6
Ligands
KXX, CA
Pockets
3 · best druggability 0.80

Structure

x-ray diffraction · 2 distinct chains · 44% helix, 17% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ASERINE/THREONINE-protein phosphatase 2B catalytic subunit gamma ISOFORM,CALCINEURIN subunit B type 1 fusion (EC 3.1.3.16)protein19062% helix, 4% strandP48454, P63098
BPeptidylprolyl isomerase (EC 5.2.1.8)protein10714% helix, 40% strandQ0VDC6

Ligands and binding sites

  • KXX · (3s,4r,5s,8r,9e,12s,14s,15r,16s,18r,19r,22r,26as)-8-ethyl-5,19-dihydroxy-3-{(1E)-1-[(1R,3R,4R)-4-hydroxy-3-methoxycyclohexyl]prop-1-en-2-yl}-14,16-dimethoxy-4, 10,12,18-tetramethyl-5,6,8,11,12,13,14,15,16,17,18,19, 24,25,26,26A-hexadecahydro-3H-15,19-epoxypyrido[2,1-c][1,4]oxazacyclotricosine-1,7,20,21(4H,23H)-tetrone · ligand · chains A, B
  • CA · Calcium ion · metal · 4 copies · chains A
  • EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
16650.800.8454KXX
2830.320.7414empty
3620.290.7415empty

Interfaces

1 interface between chains.

  • A–B · 803 Ų buried · 8 hydrogen bonds · protein-protein

Compared structures

  • 7U0T · Crystal Structure of a human Calcineurin A - Calcineurin B fusion bound to FKBP12 and… · the same entry in another collection · chain A against A, TM-score 1.00
  • P63098 · AlphaFold monomer V2.0 prediction for calcineurin subunit B type 1 (P63098) · a predicted model of the same protein · chain A against A, TM-score 0.81
  • P48454 · AlphaFold monomer V2.0 prediction for SERINE/THREONINE-protein phosphatase 2B catalytic… · a predicted model of the same protein · chain A against A, TM-score 0.35

Analyse

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.